Alright, there was another fuse that was hiding under a a little rubber guard, it was the only one I hadn't checked and I was feeling like I was going to have to to a lot more searching, but then I pulled it out and it was blown. It was on the starter solenoid which is the first thing off the battery, so when it popped it should have cut the power to everything, like the CDI, behind it, so I think I'll ride my bike to the hardware store tomorrow, get another one, and try it out. Fingers crossed!!