Thanks again for your input Functional Artist!
Tonight i tried out all different sequence of the phase wire, nothing works except for green to green, yellow to blue and blue to yellow.
Also received a new thumb throttle which doesnt have the battery indicator, so only 3 wires, and i successfully wired it up and now my "stock" pedal pulls the thumb throttle and works perfectly.
Next is F1 style brake light, i bought a momentary normally close push button so as soon as my brake master cylinder lever pulls away from the button (as i step on the brake pedal), brake light would come on.
and also led light bar is coming haha.
i am having so much fun!
Your very welcome. I'm glad you got 'er up & running.
Yup, electric karts are super kool & fun.
As for connecting lights. (dash board indicator, running light or a brake light)
Most of these controllers output pack voltage (in your case 48VDC)
The switches shouldn't be a problem as their just signal/control circuits & really don't carry much (if any) current.
But, the lights (themselves) are a different story.
Your LED light bar (most of the DC lights) is probably 12VDC. (for automotive use)
* If you connect 48VDC directly to it "POOF"

is the likely outcome.
IMO, you have (2) options
1.) Buy (3) more lights & connect all (4) 12VDC lights in series. (to create a 48VDC light)
Here is a thread with more info
http://www.diygokarts.com/vb/showthread.php?t=38841
& here is a video
https://www.youtube.com/watch?v=2GlF2aqdXQ4
or
2.) Rig up a voltage divider, here is how I did it on my (48VDC) Torsk kart.
"For the 48V to 12V voltage divider...
I soldered a 3Kohm resistor to the red wire (48V+) coming from the SC wire
...& then, soldered both a 1Kohm resistor & a piece of ~16g, black wire to the other end of the 3Kohm resistor
The other end of the 1Kohm resistor connects to the 5A fuse holder & then to the red "extension wire" going to the brake light
…& the black wire (from the voltage divider) goes to the battery pack negative (-)"
http://www.diygokarts.com/vb/showthread.php?t=38905