There's also a product number difference.
Hemi's come in a box with 60363 on it (the product number) and the non-Hemi's have (or had) 69730 printed on the box. I say that in past tense because I just read an older post on Bob's karting forum
saying someone received a Hemi in a non-Hemi (69730) box. Other people in the thread said the same thing happened to them. Either that was a factory fluke or maybe there's no longer a distinction? As far as Harbor Freight is concerned, I would bet they are all "just 6.5 HP engines" in their inventory.
The real difference is if you have a hemi you get to wear the t-shirt.
Laugh if you want but that is the gist of it. The Hemi is "super duper" and has a lot of built-up hype surrounding it (a lot of it is deserved) but there are people that are big fans of the older non-Hemi design and use it as their basis for hopped-up engines. There's pros and cons to both engines but I have long since forgotten what they were, mainly because I really didn't care. It's probably just that the parts don't all interchange between the two, and a lot of the performance parts, at first, were made for the non-Hemi just because that was the only 6.5 HP Predator engine that existed.