Once both engine's clutches are engaged, the axle will make them both turn the same rpm regardless of their relative throttle positions. Their RPM's will be synchronized, but that's not the same as syncing the throttles.
All syncing does is make sure they both idle and come off idle (start to pull) at reasonably the same time, and that the loads on both engines once running are reasonably the same, that's all. Some folks overthink it and get wrapped around the axle thinking one engine is going to be a drag on the other one, but unless it's off or it's throttle is SO far off it's trying to decellerate, that's not going to happen.
I'm halfway toying with the idea of adding a 6hp engine to my 8hp kart. Somebody argued that the 6hp engine would drag the 8hp down to a 6hp level and I'd only have 12hp at best, which is silly - unless one is an actual DRAG on the system, 8+6=14 hp.